|
|||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | ||||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |
java.lang.Object | +--jspp.SignalPeptidePredictor
Constructor Summary | |
SignalPeptidePredictor(SearchMatrix positive)
Constructs a SignalPeptidePredictor |
|
SignalPeptidePredictor(java.lang.String[] positive,
java.lang.String[] negative,
int clpos)
Constructs a SignalPeptidePredictor object |
Method Summary | |
double |
getRawScore()
Returns the raw score of the analyzed sequence. |
double |
getScore()
Returns the normalized score of the analyzed sequence. |
boolean |
isSignalPeptide()
True if analyzed sequence contains a predicted signal sequence, otherwise false. |
static void |
main(java.lang.String[] args)
|
int |
predictEnhancedPosition(java.lang.String sequence)
Predicts the most probable cleavage position inside the sequence |
int |
predictPosition(java.lang.String sequence)
|
Methods inherited from class java.lang.Object |
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
public SignalPeptidePredictor(java.lang.String[] positive, java.lang.String[] negative, int clpos)
positive
- String-array of aligned sequences containing a leader peptide for the sec pathwaynegative
- String array of negative sequences lacking a leader peptide for the sec pathwayclpos
- cleavage positionpublic SignalPeptidePredictor(SearchMatrix positive)
positive
- a SearchMatrixMethod Detail |
public int predictEnhancedPosition(java.lang.String sequence)
sequence
- the sequence to test
public int predictPosition(java.lang.String sequence)
public double getRawScore()
public double getScore()
public boolean isSignalPeptide()
public static void main(java.lang.String[] args)
|
|||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | ||||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |